CLC Genomics Workbench

The CLC Genomics Workbench is the client software for the CLC Genomics Server.

Features for the Genomics Workbench are described below:

  • Analyzing and visualizing Next Generation Sequencing data, incorporates cutting-edge technology and algorithms, while also supporting and integrating with the rest of your typical NGS workflow.
  • Read mapping of Sanger, 454, Illumina Genome Analyzer and SOLiD sequencing data
  • De novo assembly of genomes of any size (only limited by RAM available)
  • Color space mapping
  • Advanced visualization, scrolling, and zooming tools
  • SNP detection using advanced quality filtering
  • Support for multiplexing with DNA barcoding
  • RNA-seq including support for paired data and transcript-level expressio
  • Small RNA analysis
  • Expression profiling by tags
  • EST library construction
  • Advanced visualization, scrolling, and zooming tools
  • Gene expression analysis
  • Chromatin Immuno-Precipitation sequencing (ChIP-seq) analysis
  • Peak finding and peak refinement
  • Graph and table of background distribution and false discovery rate
  • Peak table and annotations

Similar feature and functionality on Partek Genomics Suite, Partek Flow, and Qlucore.